Differences

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--- tips:building_abinit [2014/01/22 16:22] – Yann Pouillon
+++ tips:building_abinit [2017/05/24 09:30] (current) – Matthieu Verstraete
@@ Line 35: / Line 35: @@
 export FC=ifort
 export CC=icc
-</code>Then issue:<code>
+</code>
+Then issue:
+<code>
 ./configure --enable-netcdf4 --prefix=/home/ucl/naps/sponce/local/Intel13  --enable-dap --enable-shared
 make
 make install
 </code>
-  - **Install Abinit with netCDF4**\\ Be careful if you have set flags into you .ac file. You should unset the variable first: <code>
+  - **Install Abinit with netCDF4**\\
+Be careful if you have set flags into you .ac file. You should unset the variable first:
+<code>
 unset FC
 unset CC
-</code> You should then add the following lines into your .ac configuration file:<code>
+</code>
+You should then add the following lines into your .ac configuration file:
+<code>
 with_netcdf_incs="-I/home/ucl/naps/sponce/local/Intel13/include"
 with_netcdf_libs="-L/home/ucl/naps/sponce/local/Intel13/lib -lnetcdf -lnetcdff"
 with_trio_flavor="netcdf+etsf_io"
-</code> Then you should make a build directory into Abinit and issue: <code>
+</code>
+For some mpi-io parallel I/O fancy stuff you may need to add the hdf5 explicitly
+<code>
+with_netcdf_incs="-I/home/ucl/naps/sponce/local/Intel13/include "
+with_netcdf_libs="-L/home/ucl/naps/sponce/local/Intel13/lib -lnetcdf -lnetcdff -lhdf5_fortran -lhdf5_hl -lhdf5"
+with_trio_flavor="netcdf+etsf_io"
+</code>
+Note that here all of the libraries have been put in the same lib and include directories for convenience (otherwise you need to add the corresponding -I<path>/include and -L<path>/lib statements)
+Then you should make a build directory into Abinit and issue:
+<code>
 ../configure --with-config-file='./name_of_your_ac_file.ac'
 make mj4