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VESTA is a 3D visualization program for structural models, volumetric data such as electron/nuclear densities, and crystal morphologies. VESTA runs on Windows, Mac OS X, and Linux. It is contributed free of charge for non-commercial users.
AVOGADRO is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture. Easy to install and all source code is available under the GNU GPL. Cross-Platform: Linux, and Mac OS X.
XCrysden is a crystalline and molecular structure visualization program aiming at display of isosurfaces and contours, which can be superimposed on crystalline structures and interactively rotated and manipulated. It runs on GNU/Linux, MAC OSX (requires X11) and Windows (requires CYGWIN).